Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7850554_7850730_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

7850554 - 7850730

Intron Length:

177

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTCAAGCTG

5'SS Class:

weak_major

3'SS Sequence:

TGGCTGAGGGCAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGGTCAA

U12 Branch Point Sequence:

GTCAAGCCAGCT

Flanking Amino Acid:

NGIALDTKRGLWCCICHVIL

Intron Amino Acid Position:

290

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

54.5

0.11

1.4

48.5

47.4

Major BPS

60.5

0.26

1.3

63.4

44.3

Major PPT

51.8

0.04

1.2

46.9

44.8

Minor 5ss

28.7

-2.4

3.3

30.6

42.7

Minor BPS

31.1

-1.3

2.3

47.83

43.9

Associated Gene:

Gene:

ZP2

Ensembl Gene ID:

ENSAPLG00000016302

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018115

7847568 - 7853241

5674