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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7850593_7850933_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7850593 - 7850933
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTGTGTTTATAC
Flanking Amino Acid:
HVSREVLKFRLHGESCPGVQ
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
33.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
87.1
0.84
0.7
84.6
30.3
Minor 5ss
34.6
-1.8
2.7
33.3
41.7
Minor BPS
48
-0.1
2.1
62.93
43

Associated Gene:

Gene:
ZP2
Ensembl Gene ID:
ENSAPLG00000016302
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017017
7847562 - 7853241
5680