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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7862907_7864149_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7862907 - 7864149
Intron Length:
1243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTCTTTTGTATA
Flanking Amino Acid:
STLVNYWYASRGEIRKQEAN
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
86.5
28.6
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
81.6
0.71
0.9
76.3
36.9
Minor 5ss
39.5
-1.2
3.1
58.2
46
Minor BPS
48.6
-0.1
1.7
62.75
38.6

Associated Gene:

Gene:
TMEM159
Ensembl Gene ID:
ENSAPLG00000016299
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017005
7862813 - 7866149
3337