About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7864289_7865114_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7864289 - 7865114
Intron Length:
826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTAT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTATTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
MACIGVIVMEGVVISIGGIA
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
68.7
38.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
84.1
0.77
0.8
85.9
26.9
Minor 5ss
37.4
-1.4
3.5
55.6
48.6
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
TMEM159
Ensembl Gene ID:
ENSAPLG00000016299
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017005
7862813 - 7866149
3337