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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7876608_7877140_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7876608 - 7877140
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTACT
5'SS Class:
major
3'SS Sequence:
CGTTATTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATACGTTATTT
Flanking Amino Acid:
ENSPSSNDIERYCYYIHNGV
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
79
34.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.4
0.64
0.9
73.2
36.9
Minor 5ss
44.5
-0.6
2.5
61.4
42.8
Minor BPS
49.4
0.03
2.3
73.83
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021316
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025811
7871654 - 7884175
12522