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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7877331_7877883_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7877331 - 7877883
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
TGATTTGTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
GTATGTATGATT
Flanking Amino Acid:
DYLISLMKAIVDYILMDPAE
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.6
38.4
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
73.7
0.53
1
66
45.1
Minor 5ss
36.7
-1.5
3.2
48.7
41.4
Minor BPS
46.1
-0.2
2
65.02
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021316
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025811
7871654 - 7884175
12522