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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7878080_7879069_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7878080 - 7879069
Intron Length:
990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGAAGT
5'SS Class:
major
3'SS Sequence:
TTACTTTCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
TTTGCTTTACTT
Flanking Amino Acid:
MYTLQQLWLSEYSYLRFVRT
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
69.2
41.7
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
76.8
0.6
0.8
72.9
31.8
Minor 5ss
36.5
-1.5
3.1
46.2
42.8
Minor BPS
65.3
0.56
1.7
82.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021316
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025811
7871654 - 7884175
12522