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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7879196_7880527_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7879196 - 7880527
Intron Length:
1332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTCAGTGCC
5'SS Class:
major
3'SS Sequence:
TGCTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTTAAAAACT
Flanking Amino Acid:
CVEAREILQNKWIPTCASIF
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.3
70.6
34.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.6
0.82
0.7
84.6
30.4
Minor 5ss
31.1
-2.2
3
37.2
33.3
Minor BPS
47.5
-0.1
2.2
73.42
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021316
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025811
7871654 - 7884175
12522