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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7883106_7883263_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7883106 - 7883263
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTATTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTTTTGTGATCT
Flanking Amino Acid:
IFESNILGPQKYLNVYKKYS
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
66.3
0.37
1.1
68.8
40.5
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
49.5
0.04
2.3
80.23
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021316
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025811
7871654 - 7884175
12522