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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7905709_7906305_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7905709 - 7906305
Intron Length:
597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCCTGA
5'SS Class:
weak_major
3'SS Sequence:
GCTTTCCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
TCACGTTTAAGT
Flanking Amino Acid:
MNTVLDDNKKLCLMSGEIIQ
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.3
0.36
1.3
56.8
45
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
78.3
0.64
0.8
70
36.6
Minor 5ss
47.4
-0.3
3
64.8
46.5
Minor BPS
48.3
-0
2
65.57
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028880
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045306
7902557 - 7906617
4061