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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7906407_7906484_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7906407 - 7906484
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGA
5'SS Class:
major
3'SS Sequence:
TTGTTCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TATTCCTATACC
Flanking Amino Acid:
LEEASPATVSRCGMIYMDPQ
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
83.9
0.76
0.8
77
37.2
Minor 5ss
36.2
-1.6
3.2
47.7
47.7
Minor BPS
62
0.36
2
75.79
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028880
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045306
7902557 - 7906617
4061