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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7923664_7925119_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7923664 - 7925119
Intron Length:
1456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGGTG
5'SS Class:
major
3'SS Sequence:
TGTCCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATTCTGATTT
Flanking Amino Acid:
IPFEALTYLTGECNYGGRVT
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1
62.8
41.6
Major BPS
100
1.24
0.5
100
0
Major PPT
85.7
0.8
0.8
80.4
31.6
Minor 5ss
38.3
-1.3
3.7
54.5
49.7
Minor BPS
51.9
0.14
1.7
68.99
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022556
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037199
7918678 - 7930913
12236
ENSAPLT00000025016
7916102 - 7928063
11962
ENSAPLT00000020769
7920000 - 7930913
10914