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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7925275_7926240_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7925275 - 7926240
Intron Length:
966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTTATTTAATT
Flanking Amino Acid:
YYIPPHGPYESYIEYLRSLP
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89.2
0.88
0.7
83.7
31.3
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
72.9
0.8
1.4
85.65
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022556
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037199
7918678 - 7930913
12236