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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7930377_7930574_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7930377 - 7930574
Intron Length:
198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GATGAAAGAGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCATCATTC
Flanking Amino Acid:
PIDHIGFEFEHTMEKMPEDG
Intron Amino Acid Position:
669

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
39.8
-0.5
1.7
30.5
40
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
48.2
-0.1
2
64.91
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022556
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020769
7920000 - 7930913
10914