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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7937279_7938984_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7937279 - 7938984
Intron Length:
1706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TTGTGCCTAACT
Flanking Amino Acid:
LHYNIPYPRPIHLPPMGLAH
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
76.5
34
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
36.8
-1.5
2.9
52.2
44.4
Minor BPS
61.7
0.45
2.1
84.63
42

Associated Gene:

Gene:
LYRM1
Ensembl Gene ID:
ENSAPLG00000015998
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016687
7937162 - 7940280
3119