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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7939078_7940121_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7939078 - 7940121
Intron Length:
1044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTAAATCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATTTTTTTAACT
Flanking Amino Acid:
AKTLFRKNKDVTDPKLIKQC
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
40.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
66.1
0.36
0.9
63
36.9
Minor 5ss
42
-0.9
2.8
53.9
43.5
Minor BPS
84.4
1.16
0.9
93.73
26.7

Associated Gene:

Gene:
LYRM1
Ensembl Gene ID:
ENSAPLG00000015998
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016687
7937162 - 7940280
3119