About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7963422_7965248_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7963422 - 7965248
Intron Length:
1827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TCTTGCTTAATA
Flanking Amino Acid:
FQAATMCKFTRKEFFEGCKA
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
82.6
30.6
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
73.6
0.53
0.9
69.8
35.4
Minor 5ss
39.2
-1.2
2.7
51.6
44.8
Minor BPS
71.2
0.66
1.7
78.78
38.5

Associated Gene:

Gene:
DCUN1D3
Ensembl Gene ID:
ENSAPLG00000015996
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016683
7962991 - 7965741
2751