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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7979332_7979672_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7979332 - 7979672
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAG
U12 Branch Point Sequence:
ACCTCTTTGAGC
Flanking Amino Acid:
QSNLSTSNKQILQRALEDVP
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
70.9
35
Major BPS
60.1
0.25
1.6
60.7
45.9
Major PPT
84.6
0.78
0.7
77
31.7
Minor 5ss
26
-2.8
3
31.8
42.6
Minor BPS
53.7
0.1
1.6
58.96
41

Associated Gene:

Gene:
REXO5
Ensembl Gene ID:
ENSAPLG00000015740
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016456
7974908 - 7988904
13997