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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7980241_7980696_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7980241 - 7980696
Intron Length:
456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTATA
5'SS Class:
major
3'SS Sequence:
TTCCTTCCACAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ATCTACTCATCT
Flanking Amino Acid:
QFFIEQGPAKVAELNLEMLL
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
78
38.6
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
65.2
0.34
1
65.3
35.3
Minor 5ss
43.5
-0.7
3
59.5
45.1
Minor BPS
49.5
0.04
2
71.84
44.7

Associated Gene:

Gene:
REXO5
Ensembl Gene ID:
ENSAPLG00000015740
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016456
7974908 - 7988904
13997