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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7981696_7982213_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7981696 - 7982213
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CTGTTCTTAATT
Flanking Amino Acid:
SLNADLQALEMIHPSVIDTS
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
85.3
0.79
0.7
77.4
31.4
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
76.4
0.91
1.2
82.85
39.2

Associated Gene:

Gene:
REXO5
Ensembl Gene ID:
ENSAPLG00000015740
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016456
7974908 - 7988904
13997