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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7982353_7983191_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7982353 - 7983191
Intron Length:
839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
ACTCCTTCCACT
Flanking Amino Acid:
PESTIVNYRTRFSGITRKML
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
77.8
38.7
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
77
0.61
1
78.5
33.7
Minor 5ss
30.5
-2.2
2.9
41.4
45
Minor BPS
48.4
-0
2
67.82
43.1

Associated Gene:

Gene:
REXO5
Ensembl Gene ID:
ENSAPLG00000015740
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016456
7974908 - 7988904
13997