About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7983308_7984144_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7983308 - 7984144
Intron Length:
837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAAATA
5'SS Class:
major
3'SS Sequence:
TTTTTCCTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
TTTTTCCTGACA
Flanking Amino Acid:
SPLFGLDCEMCLTARGNEVT
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
75.9
33
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
83.6
0.76
0.9
80.7
31.5
Minor 5ss
36.5
-1.5
3.1
45.8
43.6
Minor BPS
69.4
0.61
1.6
82.95
30.8

Associated Gene:

Gene:
REXO5
Ensembl Gene ID:
ENSAPLG00000015740
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016456
7974908 - 7988904
13997