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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7985769_7986620_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7985769 - 7986620
Intron Length:
852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCGTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
FKHLRKVFQHRFTLPPSSAS
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.8
38.2
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
84.4
0.77
0.9
85.4
29.3
Minor 5ss
37.9
-1.4
2.9
50.8
38.5
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
REXO5
Ensembl Gene ID:
ENSAPLG00000015740
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016456
7974908 - 7988904
13997