About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7986748_7987611_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7986748 - 7987611
Intron Length:
864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAACAC
5'SS Class:
major
3'SS Sequence:
TGTTTAATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTTTGTTTAATT
Flanking Amino Acid:
LGKCYNVTQPSWCRIYHQSH
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
61.1
37.8
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
81.1
0.7
0.9
74.9
38.8
Minor 5ss
37.7
-1.4
3.1
50.3
46.3
Minor BPS
74.8
0.86
1.7
91.31
32.6

Associated Gene:

Gene:
REXO5
Ensembl Gene ID:
ENSAPLG00000015740
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016456
7974908 - 7988904
13997