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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7987734_7988781_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7987734 - 7988781
Intron Length:
1048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCGGC
5'SS Class:
major
3'SS Sequence:
TTCCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCACAT
U12 Branch Point Sequence:
ACTTTCTTTACT
Flanking Amino Acid:
TERGGRHKAKEKSSRLSAAL
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
58.1
41
Major BPS
68.9
0.47
1
75
30
Major PPT
91.4
0.93
0.6
87.5
22.7
Minor 5ss
29.8
-2.3
3.5
40.6
46
Minor BPS
69.1
0.68
1.6
81.73
39.7

Associated Gene:

Gene:
REXO5
Ensembl Gene ID:
ENSAPLG00000015740
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016456
7974908 - 7988904
13997