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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7989108_7989217_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7989108 - 7989217
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCGAGGCGA
5'SS Class:
strong_major
3'SS Sequence:
GGTGGCGGCGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGCAGAG
U12 Branch Point Sequence:
GGGCGCAGAGCG
Flanking Amino Acid:
EGRPGAGRGEQRFGHLVVVD
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
1
65.3
38.6
Major BPS
39.2
-0.6
1.4
29.8
34.6
Major PPT
41.7
-0.4
1.7
34.5
41
Minor 5ss
14.3
-4.1
3.4
20.7
37.5
Minor BPS
33.7
-1.3
2
32.77
39.5

Associated Gene:

Gene:
ERI2
Ensembl Gene ID:
ENSAPLG00000015662
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016332
7989033 - 7994183
5151