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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7989118_7989441_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7989118 - 7989441
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCGAGGCGA
5'SS Class:
strong_major
3'SS Sequence:
GGTTTTGTCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGGT
U12 Branch Point Sequence:
TGTTCCTTCCCC
Flanking Amino Acid:
PGAGRGEARRVEFPAVLLNT
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
1
65.3
38.6
Major BPS
36.1
-0.8
4.3
65.3
43.7
Major PPT
74.7
0.56
1
68.8
41.9
Minor 5ss
14.3
-4.1
3.4
20.7
37.5
Minor BPS
46.2
-0.3
3.6
75.04
41.8

Associated Gene:

Gene:
ERI2
Ensembl Gene ID:
ENSAPLG00000015662
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024555
7989033 - 7990710
1678