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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7995062_7995238_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7995062 - 7995238
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TGTGTTGCAATT
Flanking Amino Acid:
VTAPYKYPRKMEFVQELPKT
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.2
1.11
0.7
90.9
28.7
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
71.7
0.49
0.8
71.3
28.5
Minor 5ss
40.2
-1.1
3.1
58.6
45.9
Minor BPS
43.8
-0.3
2.1
63.62
41.8

Associated Gene:

Gene:
ACSM3
Ensembl Gene ID:
ENSAPLG00000015304
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016010
7994978 - 8003836
8859
ENSAPLT00000036018
7994978 - 8003830
8853
ENSAPLT00000034744
7994978 - 8003830
8853