About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7996141_7996613_R


Intron Information:

Intron Rank:
9

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
7996141 - 7996613

Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ACT|GTAAGAACC

5'SS Class:
major

3'SS Sequence:
TTGTGCTTACTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTTAT

U12 Branch Point Sequence:
TTTTATATAAAA

Flanking Amino Acid:
RPPFLFTCYTDDPEKTAATI

Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
70.4
0.48
1.1
65.9
38.1

Major BPS
96.5
1.15
0.6
86
34.2

Major PPT
69.8
0.45
1
63.4
42.9

Minor 5ss
37.7
-1.4
3
55.4
41.3

Minor BPS
56
0.19
1.9
74.86
35.9

Associated Gene:

Gene:
ACSM3

Ensembl Gene ID:

Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

7994978 - 8003830
8853

7994978 - 8003836
8859

7994978 - 8003830
8853