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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7996716_7997387_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7996716 - 7997387
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTAC
5'SS Class:
major
3'SS Sequence:
TGTTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
GKPSPTYDVKIIDENGNILS
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
64.6
35.9
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
87.8
0.85
0.8
85.4
34.1
Minor 5ss
43.2
-0.7
3.1
58.4
46.5
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
ACSM3
Ensembl Gene ID:
ENSAPLG00000015304
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036018
7994978 - 8003830
8853
ENSAPLT00000034744
7994978 - 8003830
8853
ENSAPLT00000016010
7994978 - 8003836
8859