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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8001340_8002060_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8001340 - 8002060
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTAAA
5'SS Class:
major
3'SS Sequence:
TCCTCCTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TTCCGTTTTACT
Flanking Amino Acid:
WLVNVACLRTGNVLIPGTQQ
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
75.3
36.2
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
79
0.65
0.7
77.2
24.8
Minor 5ss
30
-2.3
2.7
33.5
41.8
Minor BPS
49.7
0.06
2.1
73.15
43.8

Associated Gene:

Gene:
ACSM3
Ensembl Gene ID:
ENSAPLG00000015304
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016010
7994978 - 8003836
8859
ENSAPLT00000036018
7994978 - 8003830
8853
ENSAPLT00000034744
7994978 - 8003830
8853