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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8002272_8003632_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8002272 - 8003632
Intron Length:
1361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTATTCTACA
Flanking Amino Acid:
VLDRWTKIEKEGKKNKNPAL
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1.1
81.6
33.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
89.7
0.89
0.7
84.5
30.1
Minor 5ss
49.4
-0
2.9
73.9
42.6
Minor BPS
50.9
0.02
2
72.66
38.9

Associated Gene:

Gene:
ACSM3
Ensembl Gene ID:
ENSAPLG00000015304
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016010
7994978 - 8003836
8859
ENSAPLT00000036018
7994978 - 8003830
8853
ENSAPLT00000034744
7994978 - 8003830
8853