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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8007820_8008065_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8007820 - 8008065
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTGAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TTTGTGTGAACA
Flanking Amino Acid:
YGDLLYGPEQFSDPEERLSG
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
66
39.9
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
69.7
0.44
1.1
65.6
44.4
Minor 5ss
26.5
-2.7
3.1
32.3
42.4
Minor BPS
50
-0
2.2
71.44
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024203
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045725
8007607 - 8008398
792