About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8008845_8009490_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8008845 - 8009490
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
TTGTTTTTACAG
Flanking Amino Acid:
SREEVIKELAGIVGSLNPEN
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
88.6
0.87
0.7
83.2
31.9
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
51.1
-0.1
1.8
59.4
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015259
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015896
8008592 - 8009813
1222