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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8012143_8012487_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8012143 - 8012487
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTAATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTCTTTTTAATC
Flanking Amino Acid:
VTAPYKYPRKIEFVERSELR
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
84.1
34
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
80.8
0.69
0.9
82.2
33.2
Minor 5ss
24.7
-2.9
3.6
32.7
42.2
Minor BPS
67.9
0.54
1.2
68.66
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015092
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035513
8012056 - 8022203
10148
ENSAPLT00000015727
8012056 - 8021754
9699
ENSAPLT00000047832
8012056 - 8022719
10664