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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8013501_8014488_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8013501 - 8014488
Intron Length:
988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTGTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GAGTATTTAATT
Flanking Amino Acid:
RPFTFFTRYVDDPVKTASTI
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.8
40.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.1
0.48
1
65.7
39.9
Minor 5ss
37.3
-1.4
3.1
44.3
44.6
Minor BPS
61
0.42
1.5
70.79
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015092
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035513
8012056 - 8022203
10148
ENSAPLT00000015727
8012056 - 8021754
9699
ENSAPLT00000047832
8012056 - 8022719
10664