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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8014591_8014786_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8014591 - 8014786
Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
GAAAACATAACT
Flanking Amino Acid:
GKAAPPYDVQIIDEKGSVLP
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
68.4
39.1
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
89
0.88
0.8
84.5
30.4
Minor 5ss
42.2
-0.9
3.1
55.7
48.5
Minor BPS
49.1
0.01
1.8
66.7
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015092
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035513
8012056 - 8022203
10148
ENSAPLT00000015727
8012056 - 8021754
9699
ENSAPLT00000047832
8012056 - 8022719
10664