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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8015859_8017549_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8015859 - 8017549
Intron Length:
1691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGACA
5'SS Class:
major
3'SS Sequence:
TTTAATTTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCTTTTTAATT
Flanking Amino Acid:
PQFDPKVILNTLCRYPVTTL
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
74.4
35.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
77.5
0.62
1
77.2
41.4
Minor 5ss
35
-1.7
3.2
45.6
42.5
Minor BPS
78
0.96
1
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015092
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035513
8012056 - 8022203
10148
ENSAPLT00000015727
8012056 - 8021754
9699
ENSAPLT00000047832
8012056 - 8022719
10664