Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8017707_8018154_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8017707 - 8018154

Intron Length:

448

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAAGTAT

5'SS Class:

major

3'SS Sequence:

TTGTCTTTAACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTTAT

U12 Branch Point Sequence:

TTGTCTTTAACA

Flanking Amino Acid:

SFGLGFFICGRYWMNLTPSD

Intron Amino Acid Position:

255

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.66

0.9

74.1

Major BPS

78.8

0.72

67.9

40.1

Major PPT

80.5

0.69

0.9

77.2

35.8

Minor 5ss

32.3

-2

3.4

45.9

49.3

Minor BPS

85.3

1.1

87.04

31.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015092

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047832

8012056 - 8022719

10664

ENSAPLT00000015727

8012056 - 8021754

9699