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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8020391_8020901_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8020391 - 8020901
Intron Length:
511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGGT
5'SS Class:
strong_major
3'SS Sequence:
ATTGCACTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTGCACT
Flanking Amino Acid:
WLLNTACMRTGVVFIPGTTQ
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
74.6
35.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.1
0.54
0.9
63.4
42.5
Minor 5ss
28.3
-2.5
3.3
40.6
45.6
Minor BPS
53.1
0.18
2.1
81.75
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015092
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035513
8012056 - 8022203
10148
ENSAPLT00000015727
8012056 - 8021754
9699
ENSAPLT00000047832
8012056 - 8022719
10664