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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8035688_8036383_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8035688 - 8036383
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTGATG
5'SS Class:
major
3'SS Sequence:
CCTTGTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TCTTACTGACCT
Flanking Amino Acid:
VSSPDPLRGEVVKAFVVLSA
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
66.2
44.9
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
82.3
0.73
0.8
75.6
33
Minor 5ss
34.6
-1.8
3.5
47.9
47.8
Minor BPS
55.3
0.24
2
77.85
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014935
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036496
8034670 - 8045195
10526
ENSAPLT00000015583
8034670 - 8043632
8963
ENSAPLT00000042916
8034670 - 8043632
8963