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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8036484_8037149_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8036484 - 8037149
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTGGTTTG
5'SS Class:
major
3'SS Sequence:
TTTCCTTACCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCAAAT
U12 Branch Point Sequence:
CTTTCCTTACCT
Flanking Amino Acid:
GRDDDIIISSGYRIGPFEVE
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.3
61.8
45.3
Major BPS
68.5
0.46
1
73.3
28.9
Major PPT
75.6
0.58
0.8
70
35.5
Minor 5ss
38.3
-1.3
3
41.9
44.8
Minor BPS
78.2
0.96
1.6
91.67
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014935
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042916
8034670 - 8043632
8963
ENSAPLT00000036496
8034670 - 8045195
10526
ENSAPLT00000015583
8034670 - 8043632
8963