Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8037278_8037957_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

8037278 - 8037957

Intron Length:

680

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

AAACCAATTCAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

TGTTTGTAAACC

Flanking Amino Acid:

RPLGLFSEYIDNPKKTAESE

Intron Amino Acid Position:

434

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

0.9

86.4

28.9

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

49.7

-0

1.1

43.6

40.5

Minor 5ss

43.5

-0.7

2.9

62.1

37.1

Minor BPS

50.7

2.3

70.25

41.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014935

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042916

8034670 - 8043632

8963

ENSAPLT00000036496

8034670 - 8045195

10526

ENSAPLT00000015583

8034670 - 8043632

8963