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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8039491_8041829_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
8039491 - 8041829
Intron Length:
2339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAACTGT
5'SS Class:
weak_major
3'SS Sequence:
CAAGATGTGTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
ATATCCTTTATG
Flanking Amino Acid:
KGSREGWLNFILLSFMIKHR
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.5
0.15
1.1
53.2
40.7
Major BPS
75.5
0.63
1
66
40.9
Major PPT
42.8
-0.4
1.7
42.5
46.7
Minor 5ss
41.7
-0.9
3.2
60.4
45.3
Minor BPS
63.6
0.28
1.7
66.59
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014935
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045084
8039453 - 8043632
4180