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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8042025_8042416_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8042025 - 8042416
Intron Length:
392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGAG
5'SS Class:
major
3'SS Sequence:
ATTGCTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
CTATCCCAAACT
Flanking Amino Acid:
WLVNVACMRAGIVLIPGTTQ
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1.3
72.3
39.5
Major BPS
75.1
0.62
1
65.6
41
Major PPT
79.7
0.67
0.9
70.2
40.7
Minor 5ss
27.4
-2.6
2.9
31.5
42.8
Minor BPS
56.2
0.27
2.1
77.53
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014935
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042916
8034670 - 8043632
8963
ENSAPLT00000036496
8034670 - 8045195
10526
ENSAPLT00000015583
8034670 - 8043632
8963
ENSAPLT00000045084
8039453 - 8043632
4180