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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8042628_8043434_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8042628 - 8043434
Intron Length:
807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAATC
5'SS Class:
major
3'SS Sequence:
CTATGTCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTGTTTTGAATC
Flanking Amino Acid:
VLDKWTEIEKAGKRPSNSAF
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
72.3
37.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
79.3
0.66
0.9
72.4
37.6
Minor 5ss
36
-1.6
3.4
51.4
45.5
Minor BPS
63.2
0.39
1.4
70.2
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014935
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045084
8039453 - 8043632
4180
ENSAPLT00000042916
8034670 - 8043632
8963
ENSAPLT00000036496
8034670 - 8045195
10526
ENSAPLT00000015583
8034670 - 8043632
8963