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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8043574_8045139_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8043574 - 8045139
Intron Length:
1566

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCAGAAATG
5'SS Class:
major
3'SS Sequence:
AACCTCTGTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AATTCTAAAATC
Flanking Amino Acid:
ILPVAECFFLWTFHGHSKLL
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63
0.31
1.2
61
43.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
63.7
0.31
1
57.6
37.7
Minor 5ss
24.9
-2.9
4.1
35.8
42.4
Minor BPS
49.1
-0
1.9
62.64
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014935
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036496
8034670 - 8045195
10526