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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8049359_8049489_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8049359 - 8049489
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCATATTTATGT
Flanking Amino Acid:
GRSDDIINSSGYRIGPFEVE
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
68.8
43.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.3
0.68
0.8
73.8
36.9
Minor 5ss
33.1
-1.9
2.8
33
41.8
Minor BPS
47.1
-0.1
2
65.16
45.4

Associated Gene:

Gene:
ACSM5
Ensembl Gene ID:
ENSAPLG00000014585
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042153
8047846 - 8057875
10030
ENSAPLT00000015227
8047846 - 8061704
13859