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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8050609_8050758_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8050609 - 8050758
Intron Length:
150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GTCCTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
AAAGCAGTAATG
Flanking Amino Acid:
GKAVPPYDVQIIDDHGTVVP
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
81.9
0.72
0.8
76.5
32.1
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
41.7
-0.7
2.2
44.95
41.2

Associated Gene:

Gene:
ACSM5
Ensembl Gene ID:
ENSAPLG00000014585
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042153
8047846 - 8057875
10030
ENSAPLT00000015227
8047846 - 8061704
13859