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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_8052729_8053654_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8052729 - 8053654
Intron Length:
926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ACTTTCTTATTT
Flanking Amino Acid:
PEFKPAVIAETLSRYPITTF
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
87.1
30
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
87.2
0.84
0.7
81.4
36.1
Minor 5ss
43
-0.8
2.9
57.2
47.1
Minor BPS
65
0.55
1.6
77.4
39.8

Associated Gene:

Gene:
ACSM5
Ensembl Gene ID:
ENSAPLG00000014585
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015227
8047846 - 8061704
13859